# API Reference

## Core

```{eval-rst}
.. autosummary::
   :toctree: _autosummary
   :nosignatures:

   sparank.SpaRank
   sparank.ExpConfig
   sparank.ModalityConfig
   sparank.SimulationConfig
```

## Modules

```{eval-rst}
.. autosummary::
   :toctree: _autosummary
   :nosignatures:

   sparank.modules.SpotRankTransformer
   sparank.modules.FusionLayer
   sparank.modules.NTXentLoss
   sparank.modules.DeconvCrossEntropy
```

## Data

```{eval-rst}
.. autosummary::
   :toctree: _autosummary
   :nosignatures:

   sparank.data.build_vocab
   sparank.data.tokenize_batch
   sparank.data.MemmapDataset
   sparank.data.InferenceDataset
   sparank.data.simulate
   sparank.data.find_sc_markers
   sparank.data.normalize_rna
```

## Training

```{eval-rst}
.. autosummary::
   :toctree: _autosummary
   :nosignatures:

   sparank.training.Trainer
```